Welcome to fainhD’s documentation!

Contents:

• Getting Started
  • Installation
  • To run
  • Using custom data
• Under The Hood
  • Snakemake
  • RNA-Seq Filtering: STAR
  • Contig Assembly: SPADES
  • Alignment to Known Viruses: BLASTn
  • Functional ORF Prediction: Orfipy
  • Structural Inference: Infernal

Indices and tables

• Index

• Module Index

• Search Page